Here, we have compiled tools that community members have built to access, analyze, and visualize datasets. We hope you find them helpful in advancing your efforts to use OOI data in your work.
Should you have a tool or dataset to share, please contact the HelpDesk. We will get it posted right away so others can benefit from your work and, perhaps, foster collaborative efforts.
Data Status and Data Visualization Tools
This MATLAB toolbox is useful for downloading data via the Machine-to-Machine interface.View this tool
This is a helpful tool for using R for data explorations.View this tool
This is a helpful tool for using python for data explorations.View this tool
This site provides status and data availability information on an instrument and data stream level, as well as a full list of platforms, nodes, streams, and parameters across all arrays. This site is a non-production prototype tool developed for internal use, so data are not guaranteed to be synced continually. Built by the OOI’s Data Team its purpose is to enable organized quality control testing.View this tool
Python scripts made for QA/QC of OOI data that may also be useful to external users for downloading, organizing, and plotting data.View this tool
Derived Datasets and Collaborations
Many in the OOI community use GitHub to work together to host and review code, manage projects, and build software together. This is a good place to begin to integrate OOI data into your scientific investigations.View this tool
OOI community members Felix Schwock, John Ragland, Matthew Munson, and Shima Abadi created a Python toolobx design to aid in the scientific analysis of OOI data. It allows users to access OOI broadband and low frequency hydrophone data, compute spectograms and power spectral density (PSD) estimates using the Bartlett/Welch method, and visualize spectrograms and PSD estimates.View this tool
Data from the OOI broadband and short-period seismometers and low frequency hydrophones at Axial Seamount, Slope Base, and Southern Hydrate Ridge, and bottom pressure sensors in Axial caldera installed between July-October 2014 are available through the Incorporated Research Institutions for Seismology (IRIS). Data may be pulled hourly and are available in a variety of formats. While searching within IRIS for OOI data, use the two-letter IRIS network designator “OO.” Original announcement and more information can be found here.View this tool
OOI glider data are available through ERDAPP. There it is easy to search by glider dataset. The site includes the capabilities of graphing and making tables and provides access to metadata.View these data
OOI glider data also are a part of the Glider Data Assembly Center (DAC) resource collated by the Integrated Ocean Observing System (IOOS). As new gliders are deployed, the near real-time data are added to the DAC, while older glider data are available for download, and glider tracks can be visualized using the map viewer.View these data
This site, courtesy of Bill Chadwick (Oregon State University/CIMRS), has been updated to add an inflation forecast created by Dr. Chadwick and Andy Lau (Oregon State University/CIMRS). These plots use OOI pressure data to extrapolate the average rate of inflation over the last 12 weeks and calculate the date when level of inflation at Axial Seamount will reach or exceed the pre-2015-eruption level. Note that the average rate of inflation changes with time, and reaching the threshold does not guarantee an eruption, but the volcano is likely to erupt within a year after reaching that threshold. The plots are automatically updated once a day using the latest inflation rate. (edited 05/16/18)View this tool
This module, courtesy of Timothy Crone (Lamont-Doherty Earth Observatory), provides information about remote CamHD files, or can be used to retrieve individual still frames from these files, without having to download the entire file first. The module is still under development, which should be considered if using it to develop additional code, which also is actively encouraged.View this tool
A new computer vision routine, developed by Aaron Marburg (University of Washington, Applied Physics Lab), aided by Timothy Crone (Lamont Doherty Earth Observatory), and Friedrich Knuth (Rutgers University), is able to correctly identify and tag scenes of scientific interest in the CAMHD video stream. These scenes were previously being manually identified by students at Rutgers University. A new set of time-lapse videos has been created with this enhanced metadata record, displaying one frame captured every three hours from November 2015 to July 2016. (edited 09/07/17)View this tool
Here you can view images and video of the many different organisms observed over the years of Regional Cabled Array expedition cruises. The first catalog relates to Axial Seamount, a deep-sea volcano on the Juan de Fuca spreading ridge, and the Coastal catalog contains animals seen at Hydrate Ridge, Slope Base, and Coastal Endurance cabled sites. These archives, compiled by students at the University of Washington under the guidance of Deborah Kelley (University of Washington) and Leslie Sautter, College of Charleston, are designed to be living documents, and will be continually updated to include information from future cruises and additional details provided by experts. (edited 08/29/18)View Axial Seamount View Coastal/Slope
This website, courtesy of William Wilcock (University of Washington) provides access to a near-real time catalog of earthquake detections and HYPOINVERSE locations for the Ocean Observatories Initiative cabled observatory at Axial Seamount. Support for this work comes from the National Science Foundation. (added 10/20/17)View this tool
The HelpDesk is here to help you figure out and resolve any issues you may have in accessing and using OOI data.
Our first order of business is making sure that users and potential users of OOI data have their questions answered. Whether you are stymied by how to download pCO2 data, looking to ask about how to add instrumentation to an existing array, or wondering how OOI data undergoes quality control, help is but an email or phone call away.
Contact us at firstname.lastname@example.org. We promise to give you a timely response and will strive to answer any and all questions satisfactorily.